Bones was not nominated for an official People's Choice Award, but there are plenty of unofficial polls on the site to chose from which include either Bones or Angel.
Just a few include...
Page 1To find them in that order (at this time), sort by: Fans - TV - Most Voted On
Favorite Joss Whedon creation
"TV Shows that should have been Nominated"
"What TV Couple Would you Want to See Hook Up?"
"Fav TV Vamp"
Thursday Night Shows
"Which TV Detective Duo is the Hottest?"